IL_9H3S_019

3D structure

PDB id

9H3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_L22

Experimental method

ELECTRON MICROSCOPY

Resolution

4.16 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3S_019 not in the Motif Atlas

Homologous match to IL_9DFE_019

Geometric discrepancy: 0.2393

The information below is about IL_9DFE_019

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9H3S|1|A|U|703
9H3S|1|A|G|704
9H3S|1|A|A|705
9H3S|1|A|A|706
9H3S|1|A|G|707
*
9H3S|1|A|U|724
9H3S|1|A|G|725
9H3S|1|A|G|726
9H3S|1|A|A|727
9H3S|1|A|G|728

Current chains

Chain A

23S ribosomal RNA

Nearby chains