IL_9H3S_040

3D structure

PDB id

9H3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_L22

Experimental method

ELECTRON MICROSCOPY

Resolution

4.16 Å

Loop

Sequence

GGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAA*UCAC

Length

40 nucleotides

Bulged bases

9H3S|1|A|U|1061, 9H3S|1|A|U|1066, 9H3S|1|A|A|1067, 9H3S|1|A|A|1070, 9H3S|1|A|C|1072, 9H3S|1|A|U|1078

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H3S|1|A|G|1055
9H3S|1|A|G|1056
9H3S|1|A|A|1057
9H3S|1|A|U|1058
9H3S|1|A|G|1059
9H3S|1|A|U|1060
9H3S|1|A|U|1061
9H3S|1|A|G|1062
9H3S|1|A|G|1063
9H3S|1|A|C|1064
9H3S|1|A|U|1065
9H3S|1|A|U|1066
9H3S|1|A|A|1067
9H3S|1|A|G|1068
9H3S|1|A|A|1069
9H3S|1|A|A|1070
9H3S|1|A|G|1071
9H3S|1|A|C|1072
9H3S|1|A|A|1073
9H3S|1|A|G|1074
9H3S|1|A|C|1075
9H3S|1|A|C|1076
9H3S|1|A|A|1077
9H3S|1|A|U|1078
9H3S|1|A|C|1079
9H3S|1|A|A|1080
9H3S|1|A|U|1081
9H3S|1|A|U|1082
9H3S|1|A|U|1083
9H3S|1|A|A|1084
9H3S|1|A|A|1085
9H3S|1|A|A|1086
9H3S|1|A|G|1087
9H3S|1|A|A|1088
9H3S|1|A|A|1089
9H3S|1|A|A|1090
*
9H3S|1|A|U|1101
9H3S|1|A|C|1102
9H3S|1|A|A|1103
9H3S|1|A|C|1104

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36A