IL_9H3S_042

3D structure

PDB id

9H3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_L22

Experimental method

ELECTRON MICROSCOPY

Resolution

4.16 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

9H3S|1|A|A|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3S_042 not in the Motif Atlas

Homologous match to IL_5J7L_287

Geometric discrepancy: 0.1818

The information below is about IL_5J7L_287

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91920.1

Basepair signature

cWW-cWW-tHH-cWW

Number of instances in this motif group

1

Unit IDs

9H3S|1|A|G|1202
9H3S|1|A|U|1203
9H3S|1|A|A|1204
9H3S|1|A|A|1205
9H3S|1|A|G|1206
*
9H3S|1|A|U|1240
9H3S|1|A|A|1241
9H3S|1|A|U|1242
9H3S|1|A|C|1243

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain L

Large ribosomal subunit protein uL15