IL_9H3S_044
3D structure
- PDB id
- 9H3S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S subunit precursor C-CP_YjgA_L22
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.16 Å
Loop
- Sequence
- AUAAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9H3S_044 not in the Motif Atlas
- Homologous match to IL_5J7L_289
- Geometric discrepancy: 0.109
- The information below is about IL_5J7L_289
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
9H3S|1|A|A|1262
9H3S|1|A|U|1263
9H3S|1|A|A|1264
9H3S|1|A|A|1265
9H3S|1|A|G|1266
9H3S|1|A|U|1267
9H3S|1|A|A|1268
9H3S|1|A|A|1269
*
9H3S|1|A|U|2011
9H3S|1|A|G|2012
9H3S|1|A|A|2013
9H3S|1|A|A|2014
9H3S|1|A|A|2015
9H3S|1|A|U|2016
9H3S|1|A|U|2017
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 0
- Large ribosomal subunit protein bL32
- Chain E
- Large ribosomal subunit protein uL4
- Chain S
- Large ribosomal subunit protein uL22
Coloring options: