IL_9H3S_048

3D structure

PDB id

9H3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_L22

Experimental method

ELECTRON MICROSCOPY

Resolution

4.16 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3S_048 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.1368

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

9H3S|1|A|C|1357
9H3S|1|A|G|1358
9H3S|1|A|A|1359
9H3S|1|A|G|1360
9H3S|1|A|G|1361
*
9H3S|1|A|C|1370
9H3S|1|A|G|1371
9H3S|1|A|U|1372
9H3S|1|A|A|1373
9H3S|1|A|G|1374

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain X

Large ribosomal subunit protein bL28