IL_9H3S_050

3D structure

PDB id

9H3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_L22

Experimental method

ELECTRON MICROSCOPY

Resolution

4.16 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

9H3S|1|A|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3S_050 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.2308

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

9H3S|1|A|C|1417
9H3S|1|A|G|1418
9H3S|1|A|A|1419
9H3S|1|A|A|1420
9H3S|1|A|G|1421
*
9H3S|1|A|C|1577
9H3S|1|A|U|1578
9H3S|1|A|A|1579
9H3S|1|A|A|1580
9H3S|1|A|G|1581

Current chains

Chain A

23S ribosomal RNA

Nearby chains