IL_9H3S_062

3D structure

PDB id

9H3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_L22

Experimental method

ELECTRON MICROSCOPY

Resolution

4.16 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

9H3S|1|A|G|1992

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3S_062 not in the Motif Atlas

Geometric match to IL_8C3A_484

Geometric discrepancy: 0.1375

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

9H3S|1|A|G|1666
9H3S|1|A|G|1667
9H3S|1|A|A|1668
9H3S|1|A|A|1669
9H3S|1|A|C|1670
9H3S|1|A|U|1671
9H3S|1|A|A|1672
9H3S|1|A|G|1673
9H3S|1|A|G|1674
*
9H3S|1|A|C|1990
9H3S|1|A|U|1991
9H3S|1|A|G|1992
9H3S|1|A|U|1993
9H3S|1|A|C|1994

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

Large ribosomal subunit protein uL14