IL_9H3S_076

3D structure

PDB id

9H3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_L22

Experimental method

ELECTRON MICROSCOPY

Resolution

4.16 Å

Loop

Sequence

GGAGGCUUUGAAGU*AUGGAGCCGACCUUGAAAUAC

Length

35 nucleotides

Bulged bases

9H3S|1|A|U|2130, 9H3S|1|A|U|2132, 9H3S|1|A|C|2164, 9H3S|1|A|C|2165, 9H3S|1|A|U|2166, 9H3S|1|A|G|2168, 9H3S|1|A|U|2172, 9H3S|1|A|A|2173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H3S|1|A|G|2124
9H3S|1|A|G|2125
9H3S|1|A|A|2126
9H3S|1|A|G|2127
9H3S|1|A|G|2128
9H3S|1|A|C|2129
9H3S|1|A|U|2130
9H3S|1|A|U|2131
9H3S|1|A|U|2132
9H3S|1|A|G|2133
9H3S|1|A|A|2134
9H3S|1|A|A|2135
9H3S|1|A|G|2136
9H3S|1|A|U|2137
*
9H3S|1|A|A|2154
9H3S|1|A|U|2155
9H3S|1|A|G|2156
9H3S|1|A|G|2157
9H3S|1|A|A|2158
9H3S|1|A|G|2159
9H3S|1|A|C|2160
9H3S|1|A|C|2161
9H3S|1|A|G|2162
9H3S|1|A|A|2163
9H3S|1|A|C|2164
9H3S|1|A|C|2165
9H3S|1|A|U|2166
9H3S|1|A|U|2167
9H3S|1|A|G|2168
9H3S|1|A|A|2169
9H3S|1|A|A|2170
9H3S|1|A|A|2171
9H3S|1|A|U|2172
9H3S|1|A|A|2173
9H3S|1|A|C|2174

Current chains

Chain A

23S ribosomal RNA

Nearby chains