IL_9H3S_104

3D structure

PDB id

9H3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_L22

Experimental method

ELECTRON MICROSCOPY

Resolution

4.16 Å

Loop

Sequence

CC*GAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3S_104 not in the Motif Atlas

Homologous match to IL_4WF9_126

Geometric discrepancy: 0.2985

The information below is about IL_4WF9_126

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

9H3S|1|B|C|30
9H3S|1|B|C|31
*
9H3S|1|B|G|51
9H3S|1|B|A|52
9H3S|1|B|A|53
9H3S|1|B|G|54

Current chains

Chain B

5S ribosomal RNA

Nearby chains

Chain F

Large ribosomal subunit protein uL5

Chain O

Large ribosomal subunit protein uL18