3D structure

PDB id
9H3V (explore in PDB, NAKB, or RNA 3D Hub)
Description
50S subunit precursor C-CP_L2-L28
Experimental method
ELECTRON MICROSCOPY
Resolution
3.55 Å

Loop

Sequence
GC*GAC
Length
5 nucleotides
Bulged bases
9H3V|1|A|A|764
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9H3V_018 not in the Motif Atlas
Homologous match to IL_5J7L_261
Geometric discrepancy: 0.2705
The information below is about IL_5J7L_261
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.7
Basepair signature
cWW-L-cWW
Number of instances in this motif group
132

Unit IDs

9H3V|1|A|G|697
9H3V|1|A|C|698
*
9H3V|1|A|G|763
9H3V|1|A|A|764
9H3V|1|A|C|765

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain C
Large ribosomal subunit protein uL2

Coloring options:


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