IL_9H3V_021

3D structure

PDB id

9H3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_L2-L28

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3V_021 not in the Motif Atlas

Homologous match to IL_4WF9_026

Geometric discrepancy: 0.3787

The information below is about IL_4WF9_026

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

9H3V|1|A|G|738
9H3V|1|A|A|739
9H3V|1|A|C|740
*
9H3V|1|A|G|757
9H3V|1|A|C|758

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34