IL_9H3V_079

3D structure

PDB id

9H3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_L2-L28

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3V_079 not in the Motif Atlas

Homologous match to IL_4WF9_087

Geometric discrepancy: 0.139

The information below is about IL_4WF9_087

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

9H3V|1|A|C|2350
9H3V|1|A|G|2351
9H3V|1|A|A|2352
9H3V|1|A|G|2353
*
9H3V|1|A|C|2364
9H3V|1|A|G|2365
9H3V|1|A|A|2366
9H3V|1|A|G|2367

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain W

Large ribosomal subunit protein bL27