IL_9H3V_087

3D structure

PDB id

9H3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_L2-L28

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

9H3V|1|A|A|2765

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3V_087 not in the Motif Atlas

Homologous match to IL_9DFE_106

Geometric discrepancy: 0.3276

The information below is about IL_9DFE_106

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9H3V|1|A|G|2737
9H3V|1|A|A|2738
9H3V|1|A|U|2739
9H3V|1|A|A|2740
9H3V|1|A|A|2741
9H3V|1|A|G|2742
*
9H3V|1|A|C|2762
9H3V|1|A|G|2763
9H3V|1|A|A|2764
9H3V|1|A|A|2765
9H3V|1|A|A|2766
9H3V|1|A|C|2767

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

Large ribosomal subunit protein uL13