IL_9H3Y_035

3D structure

PDB id

9H3Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor 50S_(L16)-

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

9H3Y|1|A|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3Y_035 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1751

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

9H3Y|1|A|U|1018
9H3Y|1|A|U|1019
9H3Y|1|A|A|1020
9H3Y|1|A|A|1021
9H3Y|1|A|G|1022
9H3Y|1|A|U|1023
9H3Y|1|A|G|1024
*
9H3Y|1|A|C|1140
9H3Y|1|A|U|1141
9H3Y|1|A|A|1142
9H3Y|1|A|A|1143
9H3Y|1|A|A|1144

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36A

Chain G

Large ribosomal subunit protein uL6

Chain J

Large ribosomal subunit protein uL13