IL_9H3Y_082

3D structure

PDB id

9H3Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor 50S_(L16)-

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GCC*GU

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3Y_082 not in the Motif Atlas

Geometric match to IL_7MLX_001

Geometric discrepancy: 0.347

The information below is about IL_7MLX_001

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

9H3Y|1|A|G|2102
9H3Y|1|A|C|2103
9H3Y|1|A|C|2104
*
9H3Y|1|A|G|2186
9H3Y|1|A|U|2187

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

Large ribosomal subunit protein bL9