IL_9H3Z_017

3D structure

PDB id

9H3Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

9H3Z|1|A|A|764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3Z_017 not in the Motif Atlas

Homologous match to IL_7A0S_016

Geometric discrepancy: 0.2009

The information below is about IL_7A0S_016

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9H3Z|1|A|G|697
9H3Z|1|A|C|698
*
9H3Z|1|A|G|763
9H3Z|1|A|A|764
9H3Z|1|A|C|765

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2