IL_9H3Z_030

3D structure

PDB id

9H3Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3Z_030 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.2744

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

9H3Z|1|A|G|875
9H3Z|1|A|C|876
9H3Z|1|A|A|877
9H3Z|1|A|A|878
9H3Z|1|A|G|879
*
9H3Z|1|A|C|898
9H3Z|1|A|A|899
9H3Z|1|A|A|900
9H3Z|1|A|C|901
9H3Z|1|A|C|902

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain M

50S ribosomal protein L16