IL_9H4N_044

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

CAGGG*CGCCGUG

Length

12 nucleotides

Bulged bases

9H4N|1|A2|G|1173, 9H4N|1|A2|C|1192

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|A2|C|1171
9H4N|1|A2|A|1172
9H4N|1|A2|G|1173
9H4N|1|A2|G|1174
9H4N|1|A2|G|1175
*
9H4N|1|A2|C|1190
9H4N|1|A2|G|1191
9H4N|1|A2|C|1192
9H4N|1|A2|C|1193
9H4N|1|A2|G|1194
9H4N|1|A2|U|1195
9H4N|1|A2|G|1196

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain F1

Large ribosomal subunit protein eL13

Chain F2

Large ribosomal subunit protein uL4

Chain H1

60S ribosomal protein L15

Chain U2

60S ribosomal protein L27a