IL_9H4N_059

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

G(OMG)G*UAAUC

Length

8 nucleotides

Bulged bases

9H4N|1|A2|OMG|1438, 9H4N|1|A2|A|1450, 9H4N|1|A2|A|1451, 9H4N|1|A2|U|1452

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|A2|G|1437
9H4N|1|A2|OMG|1438
9H4N|1|A2|G|1439
*
9H4N|1|A2|U|1449
9H4N|1|A2|A|1450
9H4N|1|A2|A|1451
9H4N|1|A2|U|1452
9H4N|1|A2|C|1453

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain D2

Large ribosomal subunit protein uL2

Chain H1

60S ribosomal protein L15

Chain J2

60S ribosomal protein L17

Chain d2

Large ribosomal subunit protein eL37