IL_9H4N_074

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

UUAAAG*CCCAUA

Length

12 nucleotides

Bulged bases

9H4N|1|A2|U|1872

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|A2|U|1707
9H4N|1|A2|U|1708
9H4N|1|A2|A|1709
9H4N|1|A2|A|1710
9H4N|1|A2|A|1711
9H4N|1|A2|G|1712
*
9H4N|1|A2|C|1868
9H4N|1|A2|C|1869
9H4N|1|A2|C|1870
9H4N|1|A2|A|1871
9H4N|1|A2|U|1872
9H4N|1|A2|A|1873

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A1

Large ribosomal subunit protein uL30

Chain B2

5S ribosomal RNA; 5S rRNA

Chain K2

Large ribosomal subunit protein eL18

Chain Y2

Large ribosomal subunit protein eL32

Chain Z2

60S ribosomal protein L35a