IL_9H4N_078

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

CUCAUCAG*CUGGAG

Length

14 nucleotides

Bulged bases

9H4N|1|A2|U|1732, 9H4N|1|A2|C|1733, 9H4N|1|A2|G|1857, 9H4N|1|A2|A|1859

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|A2|C|1728
9H4N|1|A2|U|1729
9H4N|1|A2|C|1730
9H4N|1|A2|A|1731
9H4N|1|A2|U|1732
9H4N|1|A2|C|1733
9H4N|1|A2|A|1734
9H4N|1|A2|G|1735
*
9H4N|1|A2|C|1855
9H4N|1|A2|U|1856
9H4N|1|A2|G|1857
9H4N|1|A2|G|1858
9H4N|1|A2|A|1859
9H4N|1|A2|G|1860

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain C1

Large ribosomal subunit protein uL6

Chain G1

60S ribosomal protein L14

Chain I2

Large ribosomal subunit protein uL13

Chain M2

Large ribosomal subunit protein eL20

Chain g2

Large ribosomal subunit protein eL40