IL_9H4N_087

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

GUAGUA(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|A2|G|2113
9H4N|1|A2|U|2114
9H4N|1|A2|A|2115
9H4N|1|A2|G|2116
9H4N|1|A2|U|2117
9H4N|1|A2|A|2118
9H4N|1|A2|OMG|2119
*
9H4N|1|A2|C|3514
9H4N|1|A2|G|3515
9H4N|1|A2|A|3516
9H4N|1|A2|A|3517
9H4N|1|A2|A|3518
9H4N|1|A2|C|3519

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain F2

Large ribosomal subunit protein uL4

Chain J2

60S ribosomal protein L17