IL_9H4N_105

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

9H4N|1|A2|U|2635

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|A2|C|2622
9H4N|1|A2|G|2623
9H4N|1|A2|U|2624
9H4N|1|A2|A|2625
9H4N|1|A2|A|2626
9H4N|1|A2|C|2627
*
9H4N|1|A2|G|2632
9H4N|1|A2|G|2633
9H4N|1|A2|A|2634
9H4N|1|A2|U|2635
9H4N|1|A2|A|2636
9H4N|1|A2|A|2637
9H4N|1|A2|G|2638

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain h2

Small ribosomal subunit protein eS32

Chain j2

Large ribosomal subunit protein eL43

Chain m2

Small subunit ribosomal RNA; SSU rRNA