IL_9H4N_116

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

C(5MC)AAAUGCCUC(OMG)*CGCG

Length

16 nucleotides

Bulged bases

9H4N|1|A2|A|3441, 9H4N|1|A2|C|3447, 9H4N|1|A2|C|3466

QA status

Modified nucleotides: 5MC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|A2|C|3437
9H4N|1|A2|5MC|3438
9H4N|1|A2|A|3439
9H4N|1|A2|A|3440
9H4N|1|A2|A|3441
9H4N|1|A2|U|3442
9H4N|1|A2|G|3443
9H4N|1|A2|C|3444
9H4N|1|A2|C|3445
9H4N|1|A2|U|3446
9H4N|1|A2|C|3447
9H4N|1|A2|OMG|3448
*
9H4N|1|A2|C|3464
9H4N|1|A2|G|3465
9H4N|1|A2|C|3466
9H4N|1|A2|G|3467

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain h2

Small ribosomal subunit protein eS32

Chain m2

Small subunit ribosomal RNA; SSU rRNA