IL_9H4N_134

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

GGCU*GAUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|A2|G|4052
9H4N|1|A2|G|4053
9H4N|1|A2|C|4054
9H4N|1|A2|U|4055
*
9H4N|1|A2|G|4092
9H4N|1|A2|A|4093
9H4N|1|A2|U|4094
9H4N|1|A2|C|4095
9H4N|1|A2|C|4096

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain D1

Large ribosomal subunit protein uL16-like

Chain E2

Large ribosomal subunit protein uL3

Chain V2

Large ribosomal subunit protein eL29