IL_9H4N_149

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

CCCAGUAC*GGAACCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|A2|C|4248
9H4N|1|A2|C|4249
9H4N|1|A2|C|4250
9H4N|1|A2|A|4251
9H4N|1|A2|G|4252
9H4N|1|A2|U|4253
9H4N|1|A2|A|4254
9H4N|1|A2|C|4255
*
9H4N|1|A2|G|4260
9H4N|1|A2|G|4261
9H4N|1|A2|A|4262
9H4N|1|A2|A|4263
9H4N|1|A2|C|4264
9H4N|1|A2|C|4265
9H4N|1|A2|G|4266

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain C1

Large ribosomal subunit protein uL6

Chain E2

Large ribosomal subunit protein uL3

Chain P2

60S ribosomal protein L23

Chain g2

Large ribosomal subunit protein eL40