IL_9H4N_151

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

UGUAU(OMG)*CGAAG

Length

11 nucleotides

Bulged bases

9H4N|1|A2|U|4286, 9H4N|1|A2|U|4288

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|A2|U|4284
9H4N|1|A2|G|4285
9H4N|1|A2|U|4286
9H4N|1|A2|A|4287
9H4N|1|A2|U|4288
9H4N|1|A2|OMG|4289
*
9H4N|1|A2|C|4314
9H4N|1|A2|G|4315
9H4N|1|A2|A|4316
9H4N|1|A2|A|4317
9H4N|1|A2|G|4318

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain E2

Large ribosomal subunit protein uL3

Chain Q2

Large ribosomal subunit protein eL24

Chain X2

Large ribosomal subunit protein eL31