IL_9H4N_164

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

GAAACGGG*CUCUCGC

Length

15 nucleotides

Bulged bases

9H4N|1|A2|C|4540

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|A2|G|4536
9H4N|1|A2|A|4537
9H4N|1|A2|A|4538
9H4N|1|A2|A|4539
9H4N|1|A2|C|4540
9H4N|1|A2|G|4541
9H4N|1|A2|G|4542
9H4N|1|A2|G|4543
*
9H4N|1|A2|C|4567
9H4N|1|A2|U|4568
9H4N|1|A2|C|4569
9H4N|1|A2|U|4570
9H4N|1|A2|C|4571
9H4N|1|A2|G|4572
9H4N|1|A2|C|4573

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain G1

60S ribosomal protein L14

Chain I2

Large ribosomal subunit protein uL13