IL_9H4N_179

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

9H4N|1|B2|U|84

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H4N_179 not in the Motif Atlas

Geometric match to IL_8QYX_171

Geometric discrepancy: 0.0382

The information below is about IL_8QYX_171

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

9H4N|1|B2|G|82
9H4N|1|B2|A|83
9H4N|1|B2|U|84
9H4N|1|B2|G|85
*
9H4N|1|B2|C|92
9H4N|1|B2|G|93
9H4N|1|B2|C|94

Current chains

Chain B2

5S ribosomal RNA

Nearby chains

Chain A1

Large ribosomal subunit protein uL30

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain D1

Large ribosomal subunit protein uL16-like

Chain M2

Large ribosomal subunit protein eL20