IL_9H4N_186

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

GUUAUGGU*AACGUC

Length

14 nucleotides

Bulged bases

9H4N|1|m2|G|113, 9H4N|1|m2|G|114

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|m2|G|108
9H4N|1|m2|U|109
9H4N|1|m2|U|110
9H4N|1|m2|A|111
9H4N|1|m2|U|112
9H4N|1|m2|G|113
9H4N|1|m2|G|114
9H4N|1|m2|U|115
*
9H4N|1|m2|A|350
9H4N|1|m2|A|351
9H4N|1|m2|C|352
9H4N|1|m2|G|353
9H4N|1|m2|U|354
9H4N|1|m2|C|355

Current chains

Chain m2

18S ribosomal RNA

Nearby chains

Chain r2

Small ribosomal subunit protein eS4

Chain w2

Small ribosomal subunit protein uS17