IL_9H4N_188

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

GGAUAACUGUG*UAGAGCUAAUAC

Length

23 nucleotides

Bulged bases

9H4N|1|m2|U|172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|m2|G|145
9H4N|1|m2|G|146
9H4N|1|m2|A|147
9H4N|1|m2|U|148
9H4N|1|m2|A|149
9H4N|1|m2|A|150
9H4N|1|m2|C|151
9H4N|1|m2|U|152
9H4N|1|m2|G|153
9H4N|1|m2|U|154
9H4N|1|m2|G|155
*
9H4N|1|m2|U|163
9H4N|1|m2|A|164
9H4N|1|m2|G|165
9H4N|1|m2|A|166
9H4N|1|m2|G|167
9H4N|1|m2|C|168
9H4N|1|m2|U|169
9H4N|1|m2|A|170
9H4N|1|m2|A|171
9H4N|1|m2|U|172
9H4N|1|m2|A|173
9H4N|1|m2|C|174

Current chains

Chain m2

18S ribosomal RNA

Nearby chains

Chain K3

40S ribosomal protein S6

Chain Q3

Small ribosomal subunit protein eS24