IL_9H4N_194

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

UAUCAA*UGACCACG

Length

14 nucleotides

Bulged bases

9H4N|1|m2|U|363, 9H4N|1|m2|C|401, 9H4N|1|m2|C|402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|m2|U|361
9H4N|1|m2|A|362
9H4N|1|m2|U|363
9H4N|1|m2|C|364
9H4N|1|m2|A|365
9H4N|1|m2|A|366
*
9H4N|1|m2|U|398
9H4N|1|m2|G|399
9H4N|1|m2|A|400
9H4N|1|m2|C|401
9H4N|1|m2|C|402
9H4N|1|m2|A|403
9H4N|1|m2|C|404
9H4N|1|m2|G|405

Current chains

Chain m2

18S ribosomal RNA

Nearby chains

Chain E3

Small ribosomal subunit protein uS12

Chain w2

Small ribosomal subunit protein uS17