IL_9H4N_226

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

9H4N|1|m2|G|972, 9H4N|1|m2|G|973

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|m2|G|954
9H4N|1|m2|C|955
9H4N|1|m2|U|956
9H4N|1|m2|A|957
9H4N|1|m2|G|958
*
9H4N|1|m2|C|969
9H4N|1|m2|U|970
9H4N|1|m2|U|971
9H4N|1|m2|G|972
9H4N|1|m2|G|973
9H4N|1|m2|A|974
9H4N|1|m2|C|975
9H4N|1|m2|C|976

Current chains

Chain m2

18S ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain O3

Small ribosomal subunit protein uS11

Chain p2

Small ribosomal subunit protein eS1