IL_9H4N_233

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|m2|G|1170
9H4N|1|m2|G|1171
9H4N|1|m2|A|1172
9H4N|1|m2|G|1173
9H4N|1|m2|U|1174
9H4N|1|m2|A|1175
9H4N|1|m2|U|1176
9H4N|1|m2|G|1177
*
9H4N|1|m2|U|1188
9H4N|1|m2|G|1189
9H4N|1|m2|A|1190
9H4N|1|m2|A|1191
9H4N|1|m2|A|1192
9H4N|1|m2|C|1193

Current chains

Chain m2

18S ribosomal RNA

Nearby chains

Chain E3

Small ribosomal subunit protein uS12

Chain h2

Small ribosomal subunit protein eS32