IL_9H4N_249

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

CAUGC*GAGG

Length

9 nucleotides

Bulged bases

9H4N|1|m2|U|1399

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|m2|C|1397
9H4N|1|m2|A|1398
9H4N|1|m2|U|1399
9H4N|1|m2|G|1400
9H4N|1|m2|C|1401
*
9H4N|1|m2|G|1449
9H4N|1|m2|A|1450
9H4N|1|m2|G|1451
9H4N|1|m2|G|1452

Current chains

Chain m2

18S ribosomal RNA

Nearby chains

Chain C3

40S ribosomal protein S20

Chain I3

Receptor of activated protein C kinase 1

Chain y2

Small ribosomal subunit protein uS9

Chain z2

40S ribosomal protein S17