IL_9H8G_044

3D structure

PDB id

9H8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 5 30S-GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

(5MC)AC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H8G_044 not in the Motif Atlas

Geometric match to IL_6DME_003

Geometric discrepancy: 0.1785

The information below is about IL_6DME_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

10

Unit IDs

9H8G|1|A|5MC|1407
9H8G|1|A|A|1408
9H8G|1|A|C|1409
*
9H8G|1|A|G|1491
9H8G|1|A|A|1492
9H8G|1|A|A|1493
9H8G|1|A|G|1494

Current chains

Chain A

16S rRNA fragment (1078-MER)

Nearby chains

Chain L

Small ribosomal subunit protein uS12