IL_9H8G_048

3D structure

PDB id

9H8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 5 30S-GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H8G_048 not in the Motif Atlas

Geometric match to IL_7A0S_073

Geometric discrepancy: 0.3153

The information below is about IL_7A0S_073

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

9H8G|1|A|U|1440
9H8G|1|A|A|1441
9H8G|1|A|G|1442
*
9H8G|1|A|C|1460
9H8G|1|A|G|1461

Current chains

Chain A

16S rRNA fragment (1078-MER)

Nearby chains

Chain T

Small ribosomal subunit protein bS20