IL_9H9H_002

3D structure

PDB id

9H9H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 1 30S-IF1-IF2-IF3-GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AG*CAU

Length

5 nucleotides

Bulged bases

9H9H|1|A|A|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H9H_002 not in the Motif Atlas

Geometric match to IL_5J7L_002

Geometric discrepancy: 0.1576

The information below is about IL_5J7L_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

9H9H|1|A|A|44
9H9H|1|A|G|45
*
9H9H|1|A|C|396
9H9H|1|A|A|397
9H9H|1|A|U|398

Current chains

Chain A

16S RNA (1534-MER)

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain Y

Translation initiation factor IF-2