IL_9H9H_004

3D structure

PDB id

9H9H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 1 30S-IF1-IF2-IF3-GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAU*AG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H9H_004 not in the Motif Atlas

Geometric match to IL_8P9A_377

Geometric discrepancy: 0.099

The information below is about IL_8P9A_377

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

9H9H|1|A|C|54
9H9H|1|A|A|55
9H9H|1|A|U|56
*
9H9H|1|A|A|356
9H9H|1|A|G|357

Current chains

Chain A

16S RNA (1534-MER)

Nearby chains

Chain Y

Translation initiation factor IF-2