IL_9H9H_056

3D structure

PDB id

9H9H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 1 30S-IF1-IF2-IF3-GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H9H_056 not in the Motif Atlas

Geometric match to IL_5J7L_057

Geometric discrepancy: 0.1306

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9H9H|1|A|C|1303
9H9H|1|A|G|1304
9H9H|1|A|G|1305
9H9H|1|A|A|1306
9H9H|1|A|U|1307
9H9H|1|A|U|1308
*
9H9H|1|A|A|1329
9H9H|1|A|U|1330
9H9H|1|A|G|1331
9H9H|1|A|A|1332
9H9H|1|A|A|1333
9H9H|1|A|G|1334

Current chains

Chain A

16S RNA (1534-MER)

Nearby chains

Chain M

Small ribosomal subunit protein uS13