IL_9H9H_058

3D structure

PDB id

9H9H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 1 30S-IF1-IF2-IF3-GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

G(4OC)CC*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H9H_058 not in the Motif Atlas

Geometric match to IL_4LFB_068

Geometric discrepancy: 0.1779

The information below is about IL_4LFB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9H9H|1|A|G|1401
9H9H|1|A|4OC|1402
9H9H|1|A|C|1403
9H9H|1|A|C|1404
*
9H9H|1|A|G|1497
9H9H|1|A|UR3|1498
9H9H|1|A|A|1499
9H9H|1|A|A|1500
9H9H|1|A|C|1501

Current chains

Chain A

16S RNA (1534-MER)

Nearby chains

Chain 2

mRNA (5'-R(P*AP*AP*UP*G)-3')

Chain Z

Translation initiation factor IF-3