3D structure

PDB id
9H9J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex 2 (BODY) 30S-IF1-IF3-tRNA-GE81112
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUGCC*GAUG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9H9J_010 not in the Motif Atlas
Geometric match to IL_5J7L_010
Geometric discrepancy: 0.1119
The information below is about IL_5J7L_010
Detailed Annotation
Minor groove platform related
Broad Annotation
Minor groove platform related
Motif group
IL_64231.5
Basepair signature
cWW-cWW-L-R-L-cWW
Number of instances in this motif group
11

Unit IDs

9H9J|1|A|C|132
9H9J|1|A|U|133
9H9J|1|A|G|134
9H9J|1|A|C|135
9H9J|1|A|C|136
*
9H9J|1|A|G|227
9H9J|1|A|A|228
9H9J|1|A|U|229
9H9J|1|A|G|230

Current chains

Chain A
16S RNA (1078-MER)

Nearby chains

Chain P
Small ribosomal subunit protein bS16
Chain T
Small ribosomal subunit protein bS20

Coloring options:


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