IL_9H9J_010
3D structure
- PDB id
- 9H9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex 2 (BODY) 30S-IF1-IF3-tRNA-GE81112
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUGCC*GAUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9H9J_010 not in the Motif Atlas
- Geometric match to IL_5J7L_010
- Geometric discrepancy: 0.1119
- The information below is about IL_5J7L_010
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- Minor groove platform related
- Motif group
- IL_64231.5
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
9H9J|1|A|C|132
9H9J|1|A|U|133
9H9J|1|A|G|134
9H9J|1|A|C|135
9H9J|1|A|C|136
*
9H9J|1|A|G|227
9H9J|1|A|A|228
9H9J|1|A|U|229
9H9J|1|A|G|230
Current chains
- Chain A
- 16S RNA (1078-MER)
Nearby chains
- Chain P
- Small ribosomal subunit protein bS16
- Chain T
- Small ribosomal subunit protein bS20
Coloring options: