3D structure

PDB id
9H9J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex 2 (BODY) 30S-IF1-IF3-tRNA-GE81112
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UAGU*AG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9H9J_015 not in the Motif Atlas
Geometric match to IL_4LFB_012
Geometric discrepancy: 0.1948
The information below is about IL_4LFB_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_22002.1
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
3

Unit IDs

9H9J|1|A|U|249
9H9J|1|A|A|250
9H9J|1|A|G|251
9H9J|1|A|U|252
*
9H9J|1|A|A|274
9H9J|1|A|G|275

Current chains

Chain A
16S RNA (1078-MER)

Nearby chains

Chain Q
Small ribosomal subunit protein uS17

Coloring options:


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