IL_9H9J_025

3D structure

PDB id

9H9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 2 (BODY) 30S-IF1-IF3-tRNA-GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

9H9J|1|A|A|532, 9H9J|1|A|U|534, 9H9J|1|A|A|535

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H9J_025 not in the Motif Atlas

Geometric match to IL_5J7L_025

Geometric discrepancy: 0.1736

The information below is about IL_5J7L_025

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9H9J|1|A|G|515
9H9J|1|A|PSU|516
9H9J|1|A|G|517
9H9J|1|A|C|518
9H9J|1|A|C|519
9H9J|1|A|A|520
9H9J|1|A|G|521
*
9H9J|1|A|C|528
9H9J|1|A|G|529
9H9J|1|A|G|530
9H9J|1|A|U|531
9H9J|1|A|A|532
9H9J|1|A|A|533
9H9J|1|A|U|534
9H9J|1|A|A|535
9H9J|1|A|C|536

Current chains

Chain A

16S RNA (1078-MER)

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain L

Small ribosomal subunit protein uS12

Chain X

Translation initiation factor IF-1