3D structure

PDB id
9H9J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex 2 (BODY) 30S-IF1-IF3-tRNA-GE81112
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CAAAC*GGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9H9J_037 not in the Motif Atlas
Geometric match to IL_4LFB_033
Geometric discrepancy: 0.0944
The information below is about IL_4LFB_033
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_05821.1
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
17

Unit IDs

9H9J|1|A|C|779
9H9J|1|A|A|780
9H9J|1|A|A|781
9H9J|1|A|A|782
9H9J|1|A|C|783
*
9H9J|1|A|G|799
9H9J|1|A|G|800
9H9J|1|A|U|801
9H9J|1|A|A|802
9H9J|1|A|G|803

Current chains

Chain A
16S RNA (1078-MER)

Nearby chains

Chain K
Small ribosomal subunit protein uS11
Chain U
Small ribosomal subunit protein bS21

Coloring options:


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