IL_9H9J_043

3D structure

PDB id

9H9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 2 (BODY) 30S-IF1-IF3-tRNA-GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GU(5MC)*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H9J_043 not in the Motif Atlas

Geometric match to IL_8CRE_049

Geometric discrepancy: 0.17

The information below is about IL_8CRE_049

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

9H9J|1|A|G|1405
9H9J|1|A|U|1406
9H9J|1|A|5MC|1407
*
9H9J|1|A|G|1494
9H9J|1|A|U|1495
9H9J|1|A|C|1496

Current chains

Chain A

16S RNA (1078-MER)

Nearby chains

Chain X

Translation initiation factor IF-1

Chain Z

Translation initiation factor IF-3