IL_9H9J_044

3D structure

PDB id

9H9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 2 (BODY) 30S-IF1-IF3-tRNA-GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

(5MC)AC*GAAG

Length

7 nucleotides

Bulged bases

9H9J|1|A|A|1492, 9H9J|1|A|A|1493

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H9J_044 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.2325

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_61702.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

9H9J|1|A|5MC|1407
9H9J|1|A|A|1408
9H9J|1|A|C|1409
*
9H9J|1|A|G|1491
9H9J|1|A|A|1492
9H9J|1|A|A|1493
9H9J|1|A|G|1494

Current chains

Chain A

16S RNA (1078-MER)

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain X

Translation initiation factor IF-1

Chain Z

Translation initiation factor IF-3