IL_9H9J_046

3D structure

PDB id

9H9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 2 (BODY) 30S-IF1-IF3-tRNA-GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H9J_046 not in the Motif Atlas

Geometric match to IL_4LFB_060

Geometric discrepancy: 0.1577

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

9H9J|1|A|G|1416
9H9J|1|A|G|1417
9H9J|1|A|A|1418
9H9J|1|A|G|1419
*
9H9J|1|A|U|1481
9H9J|1|A|G|1482
9H9J|1|A|A|1483
9H9J|1|A|C|1484

Current chains

Chain A

16S RNA (1078-MER)

Nearby chains

Chain L

Small ribosomal subunit protein uS12