3D structure

PDB id
9H9J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex 2 (BODY) 30S-IF1-IF3-tRNA-GE81112
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGAG*UGAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9H9J_046 not in the Motif Atlas
Geometric match to IL_4LFB_060
Geometric discrepancy: 0.1577
The information below is about IL_4LFB_060
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_58355.1
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
44

Unit IDs

9H9J|1|A|G|1416
9H9J|1|A|G|1417
9H9J|1|A|A|1418
9H9J|1|A|G|1419
*
9H9J|1|A|U|1481
9H9J|1|A|G|1482
9H9J|1|A|A|1483
9H9J|1|A|C|1484

Current chains

Chain A
16S RNA (1078-MER)

Nearby chains

Chain L
Small ribosomal subunit protein uS12

Coloring options:


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