IL_9H9K_005

3D structure

PDB id

9H9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 3 (HEAD) 30S-tRNA-GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9H9K|1|1|U|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H9K_005 not in the Motif Atlas

Geometric match to IL_4LFB_042

Geometric discrepancy: 0.2076

The information below is about IL_4LFB_042

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

9H9K|1|1|G|1048
9H9K|1|1|U|1049
9H9K|1|1|G|1050
*
9H9K|1|1|C|1208
9H9K|1|1|C|1209

Current chains

Chain 1

16S RNA (456-MER)

Nearby chains

Chain C

Small ribosomal subunit protein uS3

Chain N

Small ribosomal subunit protein uS14