IL_9H9N_020

3D structure

PDB id

9H9N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 4 (BODY) 30S-GE81112 (weak residual tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H9N_020 not in the Motif Atlas

Geometric match to IL_5J7L_020

Geometric discrepancy: 0.0859

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9H9N|1|A|U|409
9H9N|1|A|G|410
9H9N|1|A|A|411
9H9N|1|A|A|412
9H9N|1|A|G|413
9H9N|1|A|A|414
9H9N|1|A|A|415
9H9N|1|A|G|416
*
9H9N|1|A|U|427
9H9N|1|A|G|428
9H9N|1|A|U|429
9H9N|1|A|A|430
9H9N|1|A|A|431
9H9N|1|A|A|432
9H9N|1|A|G|433

Current chains

Chain A

16S RNA (1078-MER)

Nearby chains

Chain D

Small ribosomal subunit protein uS4